2AS5	Transcription Dna	date	Aug 22, 2005
title	Structure Of The Dna Binding Domains Of Nfat And Foxp2 Bound Specifically To Dna.
authors	Y.Wu, J.C.Stroud, M.Borde, D.L.Bates, L.Guo, A.Han, A.Rao, L.Chen
compound		source
Molecule: 5'- D(Tptpapgpgpapapapaptptptpgptptptpcpaptp Apgp)-3'; Chain: A, C Engineered: Yes		Synthetic: Yes Other_details: Solid Phase Synthesis
Molecule: 5'- D(Apapcptpaptpgpapapapcpapapaptptptptpcp Cptp)-3'; Chain: B, D Engineered: Yes		Synthetic: Yes
Molecule: Nuclear Factor Of Activated T-Cells, Cytoplasmic 2; Chain: N, M Fragment: Nfat1 Dna Binding Domain Synonym: T Cell Transcription Factor Nfat1, Nfat Pre- Existing Subunit, Nf-Atp; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nfatc2, Nfat1, Nfatp Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 De3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Plm1
Molecule: Forkhead Box Protein P2 Chain: F, G Fragment: Foxp2 Dna Binding Domain Synonym: Cag Repeat Protein 44, Trinucleotide Repeat- Containing Gene 10 Protein; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Foxp2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-30 Lic
symmetry	Space Group: P 1 21 1	R_factor 0.238 R_Free 0.287
crystal cell	length a length b length c angle alpha angle beta angle gamma 65.455 157.447 67.666 90.00 118.67 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	MG	enzyme
Gene Ontology	Chain Function Process Component F, G M, N
Primary reference	FOXP3 Controls Regulatory T Cell Function through Cooperation with NFAT., Wu Y, Borde M, Heissmeyer V, Feuerer M, Lapan AD, Stroud JC, Bates DL, Guo L, Han A, Ziegler SF, Mathis D, Benoist C, Chen L, Rao A, Cell. 2006 Jul 28;126(2):375-87. PMID:16873067

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk] Biological Unit Coordinates (2as5.pdb1.gz) 81 Kb Biological Unit Coordinates (2as5.pdb2.gz) 81 Kb LPC: Ligand-Protein Contacts for 2AS5 CSU: Contacts of Structural Units for 2AS5 Likely Quarternary Molecular Structure file(s) for 2AS5 Structure Factors (472 Kb) Retrieve 2AS5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2AS5 from S2C, [Save to disk] Re-refined 2as5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2AS5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2AS5

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 2AS5, from MSDmotif at EBI Fold representative 2as5 from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2as5_B] [2as5] [2as5_D] [2as5_G] [2as5_A] [2as5_C] [2as5_F] [2as5_N] [2as5_M] SWISS-PROT database: [O15409] [Q13469] Domain organization of [FOXP2_HUMAN] [NFAC2_HUMAN] by SWISSPFAM Domains found in 2AS5: [FH] [IPT ] by SMART

Other resources with information on 2AS5

Community annotation for 2AS5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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