2AYW Hydrolase date Sep 09, 2005
title Crystal Structure Of The Complex Formed Between Trypsin And Synthetic Highly Potent Inhibitor In The Presence Of Benzam 0.97 A Resolution
authors M.Sherawat, P.Kaur, M.Perbandt, C.Betzel, W.A.Slusarchyk, G.S.Bis C.Chang, B.L.Jacobson, H.M.Einspahr, T.P.Singh
compound source
Molecule: Cationic Trypsin
Chain: A
Synonym: Beta-Trypsin
Ec: 3.4.21.4
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
symmetry Space Group: P 32 2 1
R_factor 0.134 R_Free 0.157
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.550 68.550 73.330 90.00 90.00 120.00
method X-Ray Diffractionresolution 0.97 Å
ligand BEN, CA, GOL, MES, ONO BindingDB enzyme Hydrolase E.C.3.4.21.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the complex of trypsin with a highly potent synthetic inhibitor at 0.97 A resolution., Sherawat M, Kaur P, Perbandt M, Betzel C, Slusarchyk WA, Bisacchi GS, Chang C, Jacobson BL, Einspahr HM, Singh TP, Acta Crystallogr D Biol Crystallogr. 2007 Apr;63(Pt 4):500-7. Epub 2007, Mar 16. PMID:17372355
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (2ayw.pdb1.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 2AYW
  • CSU: Contacts of Structural Units for 2AYW
  • Likely Quarternary Molecular Structure file(s) for 2AYW
  • Structure Factors (1676 Kb)
  • Retrieve 2AYW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AYW from S2C, [Save to disk]
  • Re-refined 2ayw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2AYW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2AYW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2AYW, from MSDmotif at EBI
  • Fold representative 2ayw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ayw_A] [2ayw]
  • SWISS-PROT database: [P00760]
  • Domain organization of [TRY1_BOVIN] by SWISSPFAM
  • Domain found in 2AYW: [Tryp_SPc ] by SMART
  • Other resources with information on 2AYW
  • Community annotation for 2AYW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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