2B71 Isomerase date Oct 03, 2005
title Plasmodium Yoelii Cyclophilin-Like Protein
authors A.Dong, P.Finerty, G.Wasney, M.Vedadi, J.Lew, Y.Zhao, I.Kozieradzk M.Melone, Z.Alam, A.M.Edwards, C.H.Arrowsmith, J.Weigelt, M.Sund A.Bochkarev, R.Hui, T.Hills, Structural Genomics Consortium (S
compound source
Molecule: Cyclophilin-Like Protein
Chain: A
Engineered: Yes
 Organism_scientific: Plasmodium Yoelii
Organism_taxid: 5861
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Codon Plus Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P28-Lic-Thrombin Derived From Pe
symmetry Space Group: P 41 3 2
R_factor 0.190 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
132.399 132.399 132.399 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand CL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceGenome-scale protein expression and structural biology of Plasmodium falciparum and related Apicomplexan organisms., Vedadi M, Lew J, Artz J, Amani M, Zhao Y, Dong A, Wasney GA, Gao M, Hills T, Brokx S, Qiu W, Sharma S, Diassiti A, Alam Z, Melone M, Mulichak A, Wernimont A, Bray J, Loppnau P, Plotnikova O, Newberry K, Sundararajan E, Houston S, Walker J, Tempel W, Bochkarev A, Kozieradzki I, Edwards A, Arrowsmith C, Roos D, Kain K, Hui R, Mol Biochem Parasitol. 2007 Jan;151(1):100-10. Epub 2006 Nov 13. PMID:17125854
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (2b71.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 2B71
  • CSU: Contacts of Structural Units for 2B71
  • Structure Factors (110 Kb)
  • Retrieve 2B71 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2B71 from S2C, [Save to disk]
  • Re-refined 2b71 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2B71 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2B71
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2B71, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2b71] [2b71_A]
  • SWISS-PROT database: [Q7RRM6]
  • Domain organization of [Q7RRM6_PLAYO] by SWISSPFAM
    • Other resources with information on 2B71
  • Community annotation for 2B71 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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