2B7Z Viral Protein date Oct 05, 2005
title Structure Of Hiv-1 Protease Mutant Bound To Indinavir
authors J.C.Clemente, L.R.Stow, L.K.Janka, J.A.Jeung, K.A.Desai, L.Govind M.Agbandje-Mckenna, R.Mckenna, M.M.Goodenow, B.M.Dunn
compound source
Molecule: Hiv-1 Protease
Chain: B, A
Engineered: Yes
Mutation: Yes
 Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Star De3 Plyss
Expression_system_plasmid: Pet23a
symmetry Space Group: P 61
R_factor 0.216 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.831 61.831 84.033 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand MK1 BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (2b7z.pdb1.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 2B7Z
  • CSU: Contacts of Structural Units for 2B7Z
  • Likely Quarternary Molecular Structure file(s) for 2B7Z
  • Structure Factors (132 Kb)
  • Retrieve 2B7Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2B7Z from S2C, [Save to disk]
  • Re-refined 2b7z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2B7Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2B7Z
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2B7Z, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2b7z_B] [2b7z] [2b7z_A]
  • SWISS-PROT database: [P03367]
  • Domain organization of [POL_HV1BR] by SWISSPFAM
    • Other resources with information on 2B7Z
  • Community annotation for 2B7Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science