2BCW Ribosome date Oct 19, 2005
title Coordinates Of The N-Terminal Domain Of Ribosomal Protein L1 Terminal Domain Of Ribosomal Protein L7l12 And A Portion O Domain Of Elongation Factor G, As Fitted Into Cryo-Em Map O Escherichia Coli 70sef-Ggdpfusidic Acid Complex
authors P.P.Datta, M.R.Sharma, L.Qi, J.Frank, R.K.Agrawal
compound source
Molecule: 50s Ribosomal Protein L11
Chain: A
Fragment: N-Terminal Domain
 Organism_scientific: Thermotoga Maritima
Organism_taxid: 2336

Molecule: 50s Ribosomal Protein L7l12
Chain: B
Fragment: C-Terminal Domain
Synonym: L8
Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Elongation Factor G
Chain: C
Fragment: A Portion Of G' Domain'
Synonym: Ef-G
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 11.20 Å
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceInteraction of the G' Domain of Elongation Factor G and the C-Terminal Domain of Ribosomal Protein L7/L12 during Translocation as Revealed by Cryo-EM., Datta PP, Sharma MR, Qi L, Frank J, Agrawal RK, Mol Cell 2005 Dec 9;20(5):723-31. PMID:16337596
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (7 Kb) [Save to disk]
  • Biological Unit Coordinates (2bcw.pdb1.gz) 5 Kb
  • CSU: Contacts of Structural Units for 2BCW
  • Likely Quarternary Molecular Structure file(s) for 2BCW
  • Retrieve 2BCW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BCW from S2C, [Save to disk]
    • View 2BCW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2BCW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2BCW, from MSDmotif at EBI
  • Fold representative 2bcw from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bcw_B] [2bcw_C] [2bcw_A] [2bcw]
  • SWISS-PROT database: [P13551] [P29395] [P0A7K2]
  • Domain organization of [EFG_THETH] [RL11_THEMA] [RL7_ECOLI] by SWISSPFAM
  • Domain found in 2BCW: [RL11 ] by SMART
    • Other resources with information on 2BCW
  • Community annotation for 2BCW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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