2BDF	Transferase	date	Oct 20, 2005
title	Src Kinase In Complex With Inhibitor Ap23451
authors	D.Dalgarno, T.Stehle, P.Schelling, T.Sawyer, S.Narula
compound		source
Molecule: Proto-Oncogene Tyrosine-Protein Kinase Src Chain: A, B Fragment: Kinase Domain Synonym: P60-Src, C-Src, Pp60c-Src Ec: 2.7.1.112 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Src, Src1 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf-9 Expression_system_vector_type: Baculovirus Expression_system_vector: Pfastbac
symmetry	Space Group: P 1	R_factor 0.206 R_Free 0.271
crystal cell	length a length b length c angle alpha angle beta angle gamma 41.930 59.740 63.590 93.03 91.43 97.79
method	X-Ray Diffraction	resolution	2.10 Å
ligand	24A BindingDB	enzyme	Transferase E.C.2.7.1.112 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural basis of Src tyrosine kinase inhibition with a new class of potent and selective trisubstituted purine-based compounds., Dalgarno D, Stehle T, Narula S, Schelling P, van Schravendijk MR, Adams S, Andrade L, Keats J, Ram M, Jin L, Grossman T, MacNeil I, Metcalf C 3rd, Shakespeare W, Wang Y, Keenan T, Sundaramoorthi R, Bohacek R, Weigele M, Sawyer T, Chem Biol Drug Des. 2006 Jan;67(1):46-57. PMID:16492148

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk] Biological Unit Coordinates (2bdf.pdb1.gz) 48 Kb Biological Unit Coordinates (2bdf.pdb2.gz) 49 Kb LPC: Ligand-Protein Contacts for 2BDF CSU: Contacts of Structural Units for 2BDF Likely Quarternary Molecular Structure file(s) for 2BDF Retrieve 2BDF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2BDF from S2C, [Save to disk]

View 2BDF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2BDF

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2BDF, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2bdf_A] [2bdf_B] [2bdf] SWISS-PROT database: [P12931] Domain organization of [SRC_HUMAN] by SWISSPFAM Domain found in 2BDF: [TyrKc ] by SMART

Other resources with information on 2BDF

Community annotation for 2BDF at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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