2BED	Transferase	date	Oct 24, 2005
title	Structure Of Fpt Bound To Inhibitor Sch207736
authors	C.Strickland
compound		source
Molecule: Protein Farnesyltransferasegeranylgeranyltransfe I Alpha Subunit; Chain: A Synonym: Caax Farnesyltransferase Alpha Subunit, Ras Protei Prenyltransferase Alpha, Ftase-Alpha, Type I Protein Gerany Geranyltransferase Alpha Subunit, Ggtase-I-Alpha; Ec: 2.5.1.58, 2.5.1.59 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Gene: Fnta Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Protein Farnesyltransferase Beta Subunit Chain: B Synonym: Caax Farnesyltransferase Beta Subunit, Ras Protein Prenyltransferase Beta, Ftase-Beta; Ec: 2.5.1.58 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Gene: Fntb Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 61	R_factor 0.223 R_Free 0.262
crystal cell	length a length b length c angle alpha angle beta angle gamma 174.020 174.020 69.730 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	736, FPP, ZN	enzyme	Transferase E.C.2.5.1.58 BRENDA
Gene Ontology	Chain Function Process Component A B
Primary reference	Enhanced FTase activity achieved via piperazine interaction with catalytic zinc., Njoroge FG, Vibulbhan B, Pinto P, Strickland C, Bishop WR, Nomeir A, Girijavallabhan V, Bioorg Med Chem Lett. 2006 Feb 15;16(4):984-8. Epub 2005 Nov 16. PMID:16298128

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk] Biological Unit Coordinates (2bed.pdb1.gz) 125 Kb LPC: Ligand-Protein Contacts for 2BED CSU: Contacts of Structural Units for 2BED Likely Quarternary Molecular Structure file(s) for 2BED Structure Factors (279 Kb) Retrieve 2BED in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2BED from S2C, [Save to disk] Re-refined 2bed structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2BED in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2BED

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2BED, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2bed_B] [2bed_A] [2bed] SWISS-PROT database: [Q04631] [Q02293] Domain organization of [FNTA_RAT] [FNTB_RAT] by SWISSPFAM

Other resources with information on 2BED

Community annotation for 2BED at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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