2BGE	Hydrolase	date	Dec 21, 2004
title	Structure-Based Design Of Protein Tyrosine Phosphatase-1b Inhibitors
authors	E.Black, J.Breed, A.L.Breeze, K.Embrey, R.Garcia, T.W.Gero, L.Godfrey, P.W.Kenny, A.D.Morley, C.A.Minshull, A.D.Pannifer, J.Read, A.Rees, D.J.Russell, D.Toader, J.Tucker
compound		source
Molecule: Protein-Tyrosine Phosphatase Non-Receptor Type 1 Chain: A Fragment: Ptp1b Catalytic Domain, Residues 1-321 Synonym: Protein-Tyrosine Phosphatase 1b, Ptp-1b Ec: 3.1.3.48 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid
symmetry	Space Group: P 31 2 1	R_factor 0.2183 R_Free 0.2449
crystal cell	length a length b length c angle alpha angle beta angle gamma 89.012 89.012 104.710 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.8 Å
ligand	T2D BindingDB	enzyme	Hydrolase E.C.3.1.3.48 BRENDA
related structures	by homologous chain: 1OEM, 1PTY
Gene Ontology	Chain Function Process Component A
Primary reference	Structure-based design of protein tyrosine phosphatase-1B inhibitors., Black E, Breed J, Breeze AL, Embrey K, Garcia R, Gero TW, Godfrey L, Kenny PW, Morley AD, Minshull CA, Pannifer AD, Read J, Rees A, Russell DJ, Toader D, Tucker J, Bioorg Med Chem Lett. 2005 May 16;15(10):2503-7. PMID:15863305

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk] Biological Unit Coordinates (2bge.pdb1.gz) 57 Kb LPC: Ligand-Protein Contacts for 2BGE CSU: Contacts of Structural Units for 2BGE Likely Quarternary Molecular Structure file(s) for 2BGE Retrieve 2BGE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2BGE from S2C, [Save to disk]

View 2BGE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2BGE

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2BGE, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2bge] [2bge_A] SWISS-PROT database: [P18031] Domain organization of [PTN1_HUMAN] by SWISSPFAM Domains found in 2BGE: [PTPc] [PTPc_DSPc ] by SMART

Other resources with information on 2BGE

Community annotation for 2BGE at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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