OCA Atlas for 2BGN

2BGN

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

BMA, FUL, MAN, NAG, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
C, D, B, A	virus receptor activity chemorepellent activity
H, F, G, E

Primary reference

Crystal structures of HIV-1 Tat-derived nonapeptides Tat-(1-9) and Trp2-Tat-(1-9) bound to the active site of dipeptidyl-peptidase IV (CD26)., Weihofen WA, Liu J, Reutter W, Saenger W, Fan H, J Biol Chem. 2005 Apr 15;280(15):14911-7. Epub 2005 Jan 28. PMID:15695814

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (721 Kb) [Save to disk]

Biological Unit Coordinates (2bgn.pdb1.gz) 358 Kb

Biological Unit Coordinates (2bgn.pdb2.gz) 358 Kb

LPC: Ligand-Protein Contacts for 2BGN

CSU: Contacts of Structural Units for 2BGN

Likely Quarternary Molecular Structure file(s) for 2BGN

Structure Factors (1439 Kb)

Retrieve 2BGN in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2BGN from S2C, [Save to disk]

Re-refined 2bgn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2BGN in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2bgn] [2bgn_A] [2bgn_B] [2bgn_C] [2bgn_D] [2bgn_E] [2bgn_F] [2bgn_G] [2bgn_H] [2bgn_W] [2bgn_X] [2bgn_Y] [2bgn_Z]

SWISS-PROT database: [P56658] [P27487] [P12506]

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