2BIC Toxin date Jan 20, 2005
title The Solution Structure Of The Recombinant Elicitor Protein P The Oomycete Pathogen P. Cactorum
authors G.Nicastro, G.Orsomando, F.Desario, E.Ferrari, L.Manconi, A.Spisn S.Ruggieri
compound source
Molecule: Phytotoxic Protein Pcf
Chain: A
Engineered: Yes
Other_details: Proline 49 Is Hydroxylated
 Organism_scientific: Phytophthora Cactorum
Organism_taxid: 29920
Strain: P381
Expression_system: Pichia Pastoris
Expression_system_taxid: 644223
Expression_system_strain: Gs115
Expression_system_vector_type: Plasmid
Expression_system_vector: Ppic9-Pcf
methodSolution NMR
note 2BIC is a representative structure
Primary referenceSolution structure of the phytotoxic protein PcF: the first characterized member of the Phytophthora PcF toxin family., Nicastro G, Orsomando G, Ferrari E, Manconi L, Desario F, Amici A, Naso A, Carpaneto A, Pertinhez TA, Ruggieri S, Spisni A, Protein Sci. 2009 Aug;18(8):1786-91. PMID:19554629
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (251 Kb) [Save to disk]
  • Biological Unit Coordinates (2bic.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 2BIC
  • Retrieve 2BIC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BIC from S2C, [Save to disk]
    • View 2BIC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2BIC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BIC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bic_A] [2bic]
  • SWISS-PROT database: [Q94FS7]
  • Domain organization of [Q94FS7_9STRA] by SWISSPFAM
    • Other resources with information on 2BIC
  • Community annotation for 2BIC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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