2BOY Oxidoreductase date Apr 15, 2005
title Crystal Structure Of 3-Chlorocatechol 1,2-Dioxygenase From R Opacus 1cp
authors M.Ferraroni, I.P.Solyanikova, M.P.Kolomytseva, A.Scozzafava, L.A.Golovleva, F.Briganti
compound source
Molecule: 3-Chlorocatechol 1,2-Dioxygenase
Chain: A, B, C, D, E, F, G, H
Ec: 1.13.11.1
 Organism_scientific: Rhodococcus Opacus
Organism_taxid: 37919
Strain: 1cp
symmetry Space Group: P 1
R_factor 0.176 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.179 86.610 93.447 85.37 66.53 76.94
method X-Ray Diffractionresolution 1.90 Å
ligand BHO, FE, LPP, MG enzyme Oxidoreductase E.C.1.13.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceCrystal structure of 3-chlorocatechol 1,2-dioxygenase key enzyme of a new modified ortho-pathway from the Gram-positive Rhodococcus opacus 1CP grown on 2-chlorophenol., Ferraroni M, Kolomytseva MP, Solyanikova IP, Scozzafava A, Golovleva LA, Briganti F, J Mol Biol. 2006 Jul 21;360(4):788-99. Epub 2006 Jun 5. PMID:16793061
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (375 Kb) [Save to disk]
  • Biological Unit Coordinates (2boy.pdb1.gz) 97 Kb
  • Biological Unit Coordinates (2boy.pdb2.gz) 97 Kb
  • Biological Unit Coordinates (2boy.pdb3.gz) 94 Kb
  • Biological Unit Coordinates (2boy.pdb4.gz) 95 Kb
  • LPC: Ligand-Protein Contacts for 2BOY
  • CSU: Contacts of Structural Units for 2BOY
  • Likely Quarternary Molecular Structure file(s) for 2BOY
  • Structure Factors (1387 Kb)
  • Retrieve 2BOY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BOY from S2C, [Save to disk]
  • Re-refined 2boy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2BOY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2BOY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BOY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2boy_H] [2boy_C] [2boy_B] [2boy_D] [2boy_E] [2boy] [2boy_A] [2boy_F] [2boy_G]
  • SWISS-PROT database: [Q8G9L3]
  • Domain organization of [Q8G9L3_RHOOP] by SWISSPFAM
    • Other resources with information on 2BOY
  • Community annotation for 2BOY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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