2BY6 Hydrolase date Jul 29, 2005
title Is Radiation Damage Dependent On The Dose-Rate Used During Macromolecular Crystallography Data Collection
authors H.K.S.Leiros, J.Timmins, R.B.G.Ravelli, S.M.Mcsweeney
compound source
Molecule: Cationic Trypsin
Chain: X
Synonym: Beta-Trypsin
Ec: 3.4.21.4
Organism_scientific: Bos Taurus
Organism_taxid: 9913
symmetry Space Group: P 21 21 21
R_factor 0.105 R_Free 0.139
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.262 58.355 66.765 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.3 Å
ligand BAM, CA, GOL, SO4 enzyme Hydrolase E.C.3.4.21.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
X


Primary referenceIs radiation damage dependent on the dose rate used during macromolecular crystallography data collection?, Leiros HK, Timmins J, Ravelli RB, McSweeney SM, Acta Crystallogr D Biol Crystallogr. 2006 Feb;62(Pt 2):125-32. Epub 2006, Jan 18. PMID:16421442
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (2by6.pdb1.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 2BY6
  • CSU: Contacts of Structural Units for 2BY6
  • Likely Quarternary Molecular Structure file(s) for 2BY6
  • Structure Factors (685 Kb)
  • Retrieve 2BY6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BY6 from S2C, [Save to disk]
  • Re-refined 2by6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BY6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BY6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2BY6, from MSDmotif at EBI
  • Fold representative 2by6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2by6] [2by6_X]
  • SWISS-PROT database: [P00760]
  • Domain organization of [TRY1_BOVIN] by SWISSPFAM
  • Domain found in 2BY6: [Tryp_SPc ] by SMART
  • Other resources with information on 2BY6
  • Community annotation for 2BY6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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