2C5K	Protein Transport	date	Oct 27, 2005
title	N-Terminal Domain Of Tlg1 Complexed With N-Terminus Of Vps51
authors	Y.Fridmann-Sirkis, H.M.Kent, M.J.Lewis, P.R.Evans, H.R.B.Pelham
compound		source
Molecule: Vacuolar Protein Sorting Protein 51 Chain: P Fragment: N-Terminal Residues 9-32 Synonym: Vps51, Apical Bud Growth Protein 3 Engineered: Yes		Synthetic: Yes Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932
Molecule: T-Snare Affecting A Late Golgi Compartment Protei Chain: T Fragment: N-Terminal Domain, Residues 1-95 Synonym: Syntaxin Tlg1 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_plasmid: Pet30a
symmetry	Space Group: P 32 2 1	R_factor 0.175 R_Free 0.221
crystal cell	length a length b length c angle alpha angle beta angle gamma 60.452 60.452 62.388 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.05 Å
ligand	SO4	enzyme
note	2C5K is a representative structure
Gene Ontology	Chain Function Process Component T
Primary reference	Structural analysis of the interaction between the SNARE Tlg1 and Vps51., Fridmann-Sirkis Y, Kent HM, Lewis MJ, Evans PR, Pelham HR, Traffic. 2006 Feb;7(2):182-90. PMID:16420526

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk] Biological Unit Coordinates (2c5k.pdb1.gz) 22 Kb LPC: Ligand-Protein Contacts for 2C5K CSU: Contacts of Structural Units for 2C5K Likely Quarternary Molecular Structure file(s) for 2C5K Structure Factors (91 Kb) Retrieve 2C5K in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2C5K from S2C, [Save to disk] Re-refined 2c5k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2C5K in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2C5K

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2C5K, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2c5k] [2c5k_P] [2c5k_T] SWISS-PROT database: [Q03322] [P36116] Domain organization of [TLG1_YEAST] [VPS51_YEAST] by SWISSPFAM

Other resources with information on 2C5K

Community annotation for 2C5K at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---