OCA Atlas for 2CDY

2CDY

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, C, B, D	superoxide dismutase activit...

Primary reference

Structure of the manganese superoxide dismutase from Deinococcus radiodurans in two crystal forms., Dennis RJ, Micossi E, McCarthy J, Moe E, Gordon EJ, Kozielski-Stuhrmann S, Leonard GA, McSweeney S, Acta Crystallograph Sect F Struct Biol Cryst Commun. 2006 Apr 1;62(Pt, 4):325-9. Epub 2006 Mar 25. PMID:16582477

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]

Biological Unit Coordinates (2cdy.pdb1.gz) 38 Kb

Biological Unit Coordinates (2cdy.pdb2.gz) 36 Kb

Biological Unit Coordinates (2cdy.pdb3.gz) 36 Kb

Biological Unit Coordinates (2cdy.pdb4.gz) 37 Kb

LPC: Ligand-Protein Contacts for 2CDY

CSU: Contacts of Structural Units for 2CDY

Likely Quarternary Molecular Structure file(s) for 2CDY

Structure Factors (350 Kb)

Retrieve 2CDY in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2CDY from S2C, [Save to disk]

Re-refined 2cdy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2CDY in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2cdy] [2cdy_A] [2cdy_B] [2cdy_C] [2cdy_D]

SWISS-PROT database: [Q9RUV2]

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