2CDZ	Transferase	date	Jan 31, 2006
title	Crystal Structure Of The Human P21-Activated Kinase 4 In Com Cgp74514a
authors	J.E.Debreczeni, E.Ugochukwu, J.Eswaran, P.Filippakopoulos, S.Das O.Fedorov, M.Sundstrom, C.Arrowsmith, J.Weigelt, A.Edwards, F.Vo S.Knapp
compound		source
Molecule: Serinethreonine-Protein Kinase Pak 4 Chain: A Fragment: Kinase Domain, Residues 291-591 Synonym: Human P21-Activated Kinase 4 Ec: 2.7.1.37 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector: Pgex-6p2 Expression_system_plasmid: Pgex6b-C001
symmetry	Space Group: P 43 21 2	R_factor 0.200 R_Free 0.248
crystal cell	length a length b length c angle alpha angle beta angle gamma 145.817 145.817 42.382 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	23D, CL, SEP, SO4	enzyme	Transferase E.C.2.7.1.37 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal Structures of the p21-activated kinases PAK4, PAK5, and PAK6 reveal catalytic domain plasticity of active group II PAKs., Eswaran J, Lee WH, Debreczeni JE, Filippakopoulos P, Turnbull A, Fedorov O, Deacon SW, Peterson JR, Knapp S, Structure. 2007 Feb;15(2):201-13. PMID:17292838

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk] Biological Unit Coordinates (2cdz.pdb1.gz) 48 Kb LPC: Ligand-Protein Contacts for 2CDZ CSU: Contacts of Structural Units for 2CDZ Likely Quarternary Molecular Structure file(s) for 2CDZ Structure Factors (277 Kb) Retrieve 2CDZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2CDZ from S2C, [Save to disk] Re-refined 2cdz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2CDZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2CDZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2CDZ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2cdz_A] [2cdz] SWISS-PROT database: [O96013] Domain organization of [PAK4_HUMAN] by SWISSPFAM Domain found in 2CDZ: [S_TKc ] by SMART

Other resources with information on 2CDZ

Community annotation for 2CDZ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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