2CKE Transferase Inhibitor date Apr 18, 2006
title Human Death-Associated Drp-1 Kinase In Complex With Inhibito
authors P.Kursula, M.Wilmanns
compound source
Molecule: Death-Associated Protein Kinase 2
Chain: A, B, C, D
Fragment: Residues 11-330
Synonym: Human Drp-1 Kinase, Dap Kinase 2, Dap-Kinase- Rela Protein 1, Drp-1;
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Rosetta(De3)
Expression_system_variant: Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest-15
symmetry Space Group: P 1
R_factor 0.203 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.210 60.480 99.280 92.09 103.39 94.16
method X-Ray Diffractionresolution 2.80 Å
ligand IQU enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (198 Kb) [Save to disk]
  • Biological Unit Coordinates (2cke.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (2cke.pdb2.gz) 50 Kb
  • Biological Unit Coordinates (2cke.pdb3.gz) 50 Kb
  • Biological Unit Coordinates (2cke.pdb4.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 2CKE
  • CSU: Contacts of Structural Units for 2CKE
  • Likely Quarternary Molecular Structure file(s) for 2CKE
  • Structure Factors (226 Kb)
  • Retrieve 2CKE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CKE from S2C, [Save to disk]
  • Re-refined 2cke structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2CKE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CKE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CKE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cke_D] [2cke_A] [2cke] [2cke_C] [2cke_B]
  • SWISS-PROT database: [Q9UIK4]
  • Domain organization of [DAPK2_HUMAN] by SWISSPFAM
  • Domain found in 2CKE: [S_TKc ] by SMART
  • Other resources with information on 2CKE
  • Community annotation for 2CKE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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