2CMY Hydrolase date May 16, 2006
title Crystal Complex Between Bovine Trypsin And Veronica Hederifolia Trypsin Inhibitor
authors R.Conners, J.L.Yardley, A.Konarev, P.Shewry, R.L.Brady
compound source
Molecule: Cationic Trypsin
Chain: A
Synonym: Beta Trypsin
Ec: 3.4.21.4
Other_details: Ester Bond Between Ser 195 And Inhibitor (Ch Residue Arg15);
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Pancreas
Other_details: Purified Protein Obtained From Sigma

Molecule: Veronica Hederifolia Trypsin Inhibitor
Chain: B
Other_details: Ester Link Between Arg 15 Of Inhibitor And S Of Trypsin

Organism_scientific: Veronica Hederifolia
Organism_common: Ivyleaf Speedwell
Organism_taxid: 202477
Tissue: Seed
Other_details: Isolated From Seeds
symmetry Space Group: P 21 21 21
R_factor 0.194 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.657 63.928 71.698 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.25 Å
ligand CA, GOL, SO4 enzyme Hydrolase E.C.3.4.21.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • serine-type endopeptidase in...


  • Primary referenceAn unusual helix-turn-helix protease inhibitory motif in a novel trypsin inhibitor from seeds of veronica (Veronica hederifolia L.)., Conners R, Konarev AV, Forsyth J, Lovegrove A, Marsh JT, Joseph-Horne T, Shewry P, Brady RL, J Biol Chem. 2007 Jul 19;. PMID:17640870
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (2cmy.pdb1.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 2CMY
  • CSU: Contacts of Structural Units for 2CMY
  • Likely Quarternary Molecular Structure file(s) for 2CMY
  • Structure Factors (97 Kb)
  • Retrieve 2CMY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CMY from S2C, [Save to disk]
  • Re-refined 2cmy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2CMY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CMY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2CMY, from MSDmotif at EBI
  • Fold representative 2cmy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cmy_A] [2cmy] [2cmy_B]
  • SWISS-PROT database: [P85981] [P00760]
  • Domain organization of [TI_VERHE] [TRY1_BOVIN] by SWISSPFAM
  • Domain found in 2CMY: [Tryp_SPc ] by SMART
  • Other resources with information on 2CMY
  • Community annotation for 2CMY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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