2CTK Transport Protein, Rna Binding Protein date May 24, 2005
title Solution Structure Of The 12th Kh Type I Domain From Human V
authors T.Tomizawa, T.Kigawa, S.Koshiba, M.Inoue, S.Yokoyama, Riken Struc Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Vigilin
Chain: A
Fragment: Kh Domain
Synonym: High Density Lipoprotein-Binding Protein, Hdl-Bind Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hdlbp
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050131-01
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (529 Kb) [Save to disk]
  • Biological Unit Coordinates (2ctk.pdb1.gz) 26 Kb
  • CSU: Contacts of Structural Units for 2CTK
  • Original NMR restraints for 2CTK from PDB
  • Retrieve 2CTK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CTK from S2C, [Save to disk]
  • View 2CTK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CTK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CTK, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ctk_A] [2ctk]
  • SWISS-PROT database: [Q00341]
  • Domain organization of [VIGLN_HUMAN] by SWISSPFAM
  • Domain found in 2CTK: [KH ] by SMART
  • Other resources with information on 2CTK
  • Community annotation for 2CTK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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