2CUL Oxidoreductase date May 26, 2005
title Crystal Structure Of The Gida-Related Protein From Thermus Thermophilus Hb8
authors W.Iwasaki, H.Miyatake, K.Miki, Riken Structural Genomicsproteo Initiative (Rsgi)
compound source
Molecule: Glucose-Inhibited Division Protein A-Related Prot Probable Oxidoreductase;
Chain: A
Synonym: Gida-Related Protein
Engineered: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: P 32 2 1
R_factor 0.180 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.510 78.510 66.095 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.65 Å
ligand FAD enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the small form of glucose-inhibited division protein A from Thermus thermophilus HB8., Iwasaki W, Miyatake H, Miki K, Proteins. 2005 Dec 1;61(4):1121-6. PMID:16245325
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (2cul.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 2CUL
  • CSU: Contacts of Structural Units for 2CUL
  • Likely Quarternary Molecular Structure file(s) for 2CUL
  • Structure Factors (220 Kb)
  • Retrieve 2CUL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CUL from S2C, [Save to disk]
  • Re-refined 2cul structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2CUL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2CUL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CUL, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cul] [2cul_A]
  • SWISS-PROT database: [Q5SH33]
  • Domain organization of [Q5SH33_THET8] by SWISSPFAM
    • Other resources with information on 2CUL
  • Community annotation for 2CUL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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