2CWD Hydrolase date Jun 20, 2005
title Crystal Structure Of Tt1001 Protein From Thermus Thermophilu
authors N.K.Lokanath, Y.Terao, N.Kunishima, Riken Structural Genomicsp Initiative (Rsgi)
compound source
Molecule: Low Molecular Weight Phosphotyrosine Protein Phos
Chain: A, B, C, D
Synonym: Protein-Tyrosine Phosphatase, Tt1001 Protein
Engineered: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: P 1 21 1
R_factor 0.227 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.108 31.293 102.605 90.00 98.70 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • protein tyrosine phosphatase...


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (2cwd.pdb1.gz) 28 Kb
  • Biological Unit Coordinates (2cwd.pdb2.gz) 29 Kb
  • Biological Unit Coordinates (2cwd.pdb3.gz) 28 Kb
  • Biological Unit Coordinates (2cwd.pdb4.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 2CWD
  • CSU: Contacts of Structural Units for 2CWD
  • Likely Quarternary Molecular Structure file(s) for 2CWD
  • Structure Factors (383 Kb)
  • Retrieve 2CWD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CWD from S2C, [Save to disk]
  • Re-refined 2cwd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2CWD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2CWD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CWD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cwd_D] [2cwd_B] [2cwd_A] [2cwd_C] [2cwd]
  • SWISS-PROT database: [Q5SJ34]
  • Domain organization of [Q5SJ34_THET8] by SWISSPFAM
  • Domain found in 2CWD: [LMWPc ] by SMART
    • Other resources with information on 2CWD
  • Community annotation for 2CWD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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