2CXD Structural Genomics, Unknown Function date Jun 28, 2005
title Crystal Structure Of Conserved Hypothetical Protein, Ttha006 Thermus Thermophilus Hb8
authors S.Kishishita, K.Murayama, M.Shirouzu, S.Yokoyama, Riken Structur Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Conserved Hypothetical Protein, Ttha0068
Chain: A, B
Engineered: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11
symmetry Space Group: P 21 21 21
R_factor 0.192 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.046 55.329 56.702 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand MSE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (2cxd.pdb1.gz) 18 Kb
  • Biological Unit Coordinates (2cxd.pdb2.gz) 18 Kb
  • LPC: Ligand-Protein Contacts for 2CXD
  • CSU: Contacts of Structural Units for 2CXD
  • Likely Quarternary Molecular Structure file(s) for 2CXD
  • Structure Factors (96 Kb)
  • Retrieve 2CXD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CXD from S2C, [Save to disk]
  • Re-refined 2cxd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2CXD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2CXD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CXD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cxd_B] [2cxd_A] [2cxd]
  • SWISS-PROT database: [Q5SM75]
  • Domain organization of [Q5SM75_THET8] by SWISSPFAM
    • Other resources with information on 2CXD
  • Community annotation for 2CXD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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