2D02		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	HC4	enzyme
note	2D02 (Molecule of the Month:pdb183)
Gene Ontology	Chain Function Process Component A
Primary reference	The Crystal Structure of the R52Q Mutant Demonstrates a Role for R52 in Chromophore pK(a) Regulation in Photoactive Yellow Protein(,)., Shimizu N, Kamikubo H, Yamazaki Y, Imamoto Y, Kataoka M, Biochemistry. 2006 Mar 21;45(11):3542-7. PMID:16533035

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk] Biological Unit Coordinates (2d02.pdb1.gz) 48 Kb LPC: Ligand-Protein Contacts for 2D02 CSU: Contacts of Structural Units for 2D02 Likely Quarternary Molecular Structure file(s) for 2D02 Structure Factors (126 Kb) Retrieve 2D02 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2D02 from S2C, [Save to disk] Re-refined 2d02 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2D02 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2d02] [2d02_A] SWISS-PROT database: [P16113] Domain found in 2D02: [PAS ] by SMART

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---