2D1K Structural Protein date Aug 26, 2005
title Ternary Complex Of The Wh2 Domain Of Mim With Actin-Dnase I
authors D.Chereau, F.Kerff, R.Dominguez
compound source
Molecule: Actin, Alpha Skeletal Muscle
Chain: A
Synonym: Alpha-Actin 1
 Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Tissue: Skeletal Muscle

Molecule: Deoxyribonuclease-1
Chain: B
Synonym: Deoxyribonuclease I, Dnase I
Ec: 3.1.21.1
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Tissue: Pancreas

Molecule: Metastasis Suppressor Protein 1
Chain: C
Fragment: Wh2 Domain (Residues 724-755)
Synonym: Mim, Missing In Metastasis Protein, Metastasis Sup Ygl-1;
Engineered: Yes
Synthetic: Yes
Other_details: Synthetic Peptide. This Sequence Occurs Natu Homo Sapiens (Humans)
symmetry Space Group: P 21 21 21
R_factor 0.217 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.093 75.487 228.991 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand ATP, BMA, CA, HIC, MG, NAG enzyme Hydrolase E.C.3.1.21.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


Primary referenceStructural basis for the actin-binding function of missing-in-metastasis., Lee SH, Kerff F, Chereau D, Ferron F, Klug A, Dominguez R, Structure. 2007 Feb;15(2):145-55. PMID:17292833
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (2d1k.pdb1.gz) 108 Kb
  • LPC: Ligand-Protein Contacts for 2D1K
  • CSU: Contacts of Structural Units for 2D1K
  • Likely Quarternary Molecular Structure file(s) for 2D1K
  • Structure Factors (376 Kb)
  • Retrieve 2D1K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2D1K from S2C, [Save to disk]
  • Re-refined 2d1k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2D1K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2D1K
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2D1K, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2d1k] [2d1k_C] [2d1k_B] [2d1k_A]
  • SWISS-PROT database: [P68135] [P00639] [O43312]
  • Domain organization of [ACTS_RABIT] [DNAS1_BOVIN] [MTSS1_HUMAN] by SWISSPFAM
  • Domains found in 2D1K: [ACTIN] [DNaseIc] [WH2 ] by SMART
    • Other resources with information on 2D1K
  • Community annotation for 2D1K at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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