2D1X	Cell Invasion	date	Sep 01, 2005
title	The Crystal Structure Of The Cortactin-Sh3 Domain And Amap1- Complex
authors	S.Hashimoto, M.Hirose, A.Hashimoto, M.Morishige, A.Yamada, H.Hosa K.Akagi, E.Ogawa, C.Oneyama, T.Agatsuma, M.Okada, H.Kobayashi, H. H.Nakano, T.Ikegami, A.Nakagawa, H.Sabe
compound		source
Molecule: Cortactin Isoform A Chain: A, B, C, D Fragment: Sh3 Domain Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cttn(Amino Acids 490-550) Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex6p-1
Molecule: Proline Rich Region From Development And Differen Enhancing Factor 1; Chain: P, Q Engineered: Yes		Synthetic: Yes Other_details: This Sequence Occurs Naturally In Humans.
symmetry	Space Group: C 2 2 21	R_factor 0.216 R_Free 0.226
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.450 132.140 61.200 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	SO4	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Targeting AMAP1 and cortactin binding bearing an atypical src homology 3/proline interface for prevention of breast cancer invasion and metastasis., Hashimoto S, Hirose M, Hashimoto A, Morishige M, Yamada A, Hosaka H, Akagi K, Ogawa E, Oneyama C, Agatsuma T, Okada M, Kobayashi H, Wada H, Nakano H, Ikegami T, Nakagawa A, Sabe H, Proc Natl Acad Sci U S A. 2006 May 2;103(18):7036-41. Epub 2006 Apr 24. PMID:16636290

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk] Biological Unit Coordinates (2d1x.pdb1.gz) 24 Kb Biological Unit Coordinates (2d1x.pdb2.gz) 24 Kb LPC: Ligand-Protein Contacts for 2D1X CSU: Contacts of Structural Units for 2D1X Likely Quarternary Molecular Structure file(s) for 2D1X Structure Factors (153 Kb) Retrieve 2D1X in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2D1X from S2C, [Save to disk] Re-refined 2d1x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2D1X in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2D1X

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2D1X, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2d1x_Q] [2d1x_P] [2d1x_B] [2d1x] [2d1x_A] [2d1x_D] [2d1x_C] SWISS-PROT database: [Q14247] Domain organization of [SRC8_HUMAN] by SWISSPFAM Domain found in 2D1X: [SH3 ] by SMART

Other resources with information on 2D1X

Community annotation for 2D1X at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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