2D4P Structural Genomics, Unknown Function date Oct 21, 2005
title Crystal Structure Of Ttha1254 (Wild Type) From Thermus Therm Hb8
authors E.Mizohata, T.Uchikubo, Y.Kinoshita, T.Terada, M.Shirouzu, S.Kura S.Yokoyama, Riken Structural Genomicsproteomics Initiative
compound source
Molecule: Hypothetical Protein Ttha1254
Chain: A
Engineered: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: P 31 2 1
R_factor 0.168 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.721 61.721 74.707 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.70 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (2d4p.pdb1.gz) 24 Kb
  • Biological Unit Coordinates (2d4p.pdb2.gz) 47 Kb
  • CSU: Contacts of Structural Units for 2D4P
  • Likely Quarternary Molecular Structure file(s) for 2D4P
  • Structure Factors (275 Kb)
  • Retrieve 2D4P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2D4P from S2C, [Save to disk]
  • Re-refined 2d4p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2D4P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2D4P
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2D4P, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2d4p] [2d4p_A]
  • SWISS-PROT database: [Q72J89]
  • Domain organization of [Q72J89_THET2] by SWISSPFAM
    • Other resources with information on 2D4P
  • Community annotation for 2D4P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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