OCA Atlas for 2D4R

2D4R

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

MSE, SO4

enzyme

Primary reference

Structure of a conserved hypothetical protein, TTHA0849 from Thermus thermophilus HB8, at 2.4 A resolution: a putative member of the StAR-related lipid-transfer (START) domain superfamily., Nakabayashi M, Shibata N, Komori H, Ueda Y, Iino H, Ebihara A, Kuramitsu S, Higuchi Y, Acta Crystallograph Sect F Struct Biol Cryst Commun. 2005 Dec 1;61(Pt, 12):1027-31. Epub 2005 Nov 5. PMID:16511226

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]

Biological Unit Coordinates (2d4r.pdb1.gz) 27 Kb

Biological Unit Coordinates (2d4r.pdb2.gz) 28 Kb

Biological Unit Coordinates (2d4r.pdb3.gz) 27 Kb

Biological Unit Coordinates (2d4r.pdb4.gz) 28 Kb

Biological Unit Coordinates (2d4r.pdb5.gz) 103 Kb

LPC: Ligand-Protein Contacts for 2D4R

CSU: Contacts of Structural Units for 2D4R

Likely Quarternary Molecular Structure file(s) for 2D4R

Structure Factors (915 Kb)

Retrieve 2D4R in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2D4R from S2C, [Save to disk]

Re-refined 2d4r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2D4R in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2d4r] [2d4r_A] [2d4r_B] [2d4r_C] [2d4r_D]

SWISS-PROT database: [Q5SK03]

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