2D5K		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	GOL	enzyme
Gene Ontology	Chain Function Process Component A, D, B, C
Primary reference	Nucleoid compaction by MrgA(Asp56Ala/Glu60Ala) does not contribute to staphylococcal cell survival against oxidative stress and phagocytic killing by macrophages., Ushijima Y, Ohniwa RL, Maruyama A, Saito S, Tanaka Y, Morikawa K, FEMS Microbiol Lett. 2014 Nov;360(2):144-51. doi: 10.1111/1574-6968.12598. Epub, 2014 Oct 21. PMID:25227518

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk] Biological Unit Coordinates (2d5k.pdb1.gz) 303 Kb LPC: Ligand-Protein Contacts for 2D5K CSU: Contacts of Structural Units for 2D5K Likely Quarternary Molecular Structure file(s) for 2D5K Structure Factors (712 Kb) Retrieve 2D5K in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2D5K from S2C, [Save to disk] Re-refined 2d5k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2D5K in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2d5k] [2d5k_A] [2d5k_B] [2d5k_C] [2d5k_D] SWISS-PROT database: [Q5HE61]

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