2D5Z date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand HEM, L35 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C
  • peroxidase activity


    • B, D
  • peroxidase activity


    • Primary referenceR-state haemoglobin with low oxygen affinity: crystal structures of deoxy human and carbonmonoxy horse haemoglobin bound to the effector molecule L35., Yokoyama T, Neya S, Tsuneshige A, Yonetani T, Park SY, Tame JR, J Mol Biol. 2006 Feb 24;356(3):790-801. Epub 2005 Dec 21. PMID:16403522
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (2d5z.pdb1.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 2D5Z
  • CSU: Contacts of Structural Units for 2D5Z
  • Likely Quarternary Molecular Structure file(s) for 2D5Z
  • Structure Factors (628 Kb)
  • Retrieve 2D5Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2D5Z from S2C, [Save to disk]
  • Re-refined 2d5z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2D5Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2d5z] [2d5z_A] [2d5z_B] [2d5z_C] [2d5z_D]
  • SWISS-PROT database: [P69905] [P68871]
  • Belongs to the pore-forming globin (globin) family according to TCDB.
  • Belongs to the pore-forming globin (globin) family according to TCDB.

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