2D9D Chaperone date Dec 09, 2005
title Solution Structure Of The Bag Domain (275-350) Of Bag-Family Chaperone Regulator-5
authors R.Hatta, F.Hayashi, M.Yoshida, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Bag Family Molecular Chaperone Regulator 5
Chain: A
Fragment: Bag Domain
Synonym: Bcl2-Associated Athanogene 5, Bag-5
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bag5
Expression_system: Cell Free Protein Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P04070-E03
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe C-terminal BAG domain of BAG5 induces conformational changes of the Hsp70 nucleotide-binding domain for ADP-ATP exchange., Arakawa A, Handa N, Ohsawa N, Shida M, Kigawa T, Hayashi F, Shirouzu M, Yokoyama S, Structure. 2010 Mar 10;18(3):309-19. PMID:20223214
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (473 Kb) [Save to disk]
  • Biological Unit Coordinates (2d9d.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 2D9D
  • Retrieve 2D9D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2D9D from S2C, [Save to disk]
    • View 2D9D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2D9D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2D9D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2d9d] [2d9d_A]
  • SWISS-PROT database: [Q9UL15]
  • Domain organization of [BAG5_HUMAN] by SWISSPFAM
  • Domain found in 2D9D: [BAG ] by SMART
    • Other resources with information on 2D9D
  • Community annotation for 2D9D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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