OCA Atlas for 2DBR

2DBR

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

NAP, SO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, E, D, B, F, C

Primary reference

Structure of archaeal glyoxylate reductase from Pyrococcus horikoshii OT3 complexed with nicotinamide adenine dinucleotide phosphate., Yoshikawa S, Arai R, Kinoshita Y, Uchikubo-Kamo T, Wakamatsu T, Akasaka R, Masui R, Terada T, Kuramitsu S, Shirouzu M, Yokoyama S, Acta Crystallogr D Biol Crystallogr. 2007 Mar;63(Pt 3):357-65. Epub 2007, Feb 21. PMID:17327673

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (333 Kb) [Save to disk]

Biological Unit Coordinates (2dbr.pdb1.gz) 112 Kb

Biological Unit Coordinates (2dbr.pdb2.gz) 113 Kb

Biological Unit Coordinates (2dbr.pdb3.gz) 112 Kb

LPC: Ligand-Protein Contacts for 2DBR

CSU: Contacts of Structural Units for 2DBR

Likely Quarternary Molecular Structure file(s) for 2DBR

Structure Factors (511 Kb)

Retrieve 2DBR in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2DBR from S2C, [Save to disk]

Re-refined 2dbr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2DBR in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2dbr_A] [2dbr] [2dbr_] [2dbr_B] [2dbr_C] [2dbr_D] [2dbr_E] [2dbr_F]

SWISS-PROT database: [O58320]

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