2DMP Dna Binding Protein date Apr 24, 2006
title Solution Structure Of The Third Homeobox Domain Of Zinc Fing Homeoboxes Protein 2
authors S.Ohnishi, A.Sasagawa, K.Saito, S.Koshiba, M.Inoue, T.Kigawa, S.Yo Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Zinc Fingers And Homeoboxes Protein 2
Chain: A
Fragment: Homeobox Domain
Synonym: Zinc Finger And Homeodomain Protein 2, Alpha-Fetop Regulator 1, Afp Regulator 1, Regulator Of Afp;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Zhx2
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050404-24
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (463 Kb) [Save to disk]
  • Biological Unit Coordinates (2dmp.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 2DMP
  • Retrieve 2DMP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DMP from S2C, [Save to disk]
  • View 2DMP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DMP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DMP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dmp] [2dmp_A]
  • SWISS-PROT database: [Q9Y6X8]
  • Domain organization of [ZHX2_HUMAN] by SWISSPFAM
  • Domain found in 2DMP: [HOX ] by SMART
  • Other resources with information on 2DMP
  • Community annotation for 2DMP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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