2DRE Crystal structure of Water-soluble chlorophyll protein from lepidium virginicum at 2.00 angstrom resolution date
authors Horigome, D., Satoh, H., Itoh, N., Mitsunaga, K., Oonishi, I., Nakagawa, A., Uchida, A.
compound source
symmetry
R_factor
R_Free 0.28
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand CLA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • endopeptidase inhibitor acti...


  • Primary referenceStructural mechanism and photoprotective function of water-soluble chlorophyll-binding protein., Horigome D, Satoh H, Itoh N, Mitsunaga K, Oonishi I, Nakagawa A, Uchida A, J Biol Chem. 2006 Dec 14;. PMID:17170107
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk]
  • Biological Unit Coordinates (2dre.pdb1.gz) 126 Kb
  • LPC: Ligand-Protein Contacts for 2DRE
  • CSU: Contacts of Structural Units for 2DRE
  • Structure Factors (408 Kb)
  • Retrieve 2DRE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DRE from S2C, [Save to disk]
  • Re-refined 2dre structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2DRE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DRE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2DRE, from MSDmotif at EBI
  • Fold representative 2dre from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dre] [2dre_B] [2dre_D] [2dre_A] [2dre_C]
  • SWISS-PROT database: [O04797]
  • Domain organization of [O04797_LEPVR] by SWISSPFAM
  • Domain found in 2DRE: [STI ] by SMART
  • Other resources with information on 2DRE
  • Community annotation for 2DRE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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