2DSX Electron Transport date Jul 07, 2006
title Crystal Structure Of Rubredoxin From Desulfovibrio Gigas To 0.68 A Resolution
authors C.J.Chen, Y.H.Lin, Y.C.Huang, M.Y.Liu
compound source
Molecule: Rubredoxin
Chain: A
Synonym: Rd
 Organism_scientific: Desulfovibrio Gigas
Organism_taxid: 879
symmetry Space Group: P 1 21 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
19.474 41.324 24.129 90.00 108.20 90.00
method X-Ray Diffractionresolution 0.68 Å
ligand FE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


    • Primary referenceCrystal structure of rubredoxin from Desulfovibrio gigas to ultra-high 0.68A resolution., Chen CJ, Lin YH, Huang YC, Liu MY, Biochem Biophys Res Commun. 2006 Oct 13;349(1):79-90. Epub 2006 Aug 11. PMID:16930541
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (2dsx.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 2DSX
  • CSU: Contacts of Structural Units for 2DSX
  • Likely Quarternary Molecular Structure file(s) for 2DSX
  • Retrieve 2DSX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DSX from S2C, [Save to disk]
    • View 2DSX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DSX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DSX, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dsx] [2dsx_A]
  • SWISS-PROT database: [P00270]
  • Domain organization of [RUBR_DESGI] by SWISSPFAM
    • Other resources with information on 2DSX
  • Community annotation for 2DSX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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