2DVJ Signaling Protein date Jul 31, 2006
title Phosphorylated Crk-II
authors Y.Kobashigawa, F.Inagaki
compound source
Molecule: V-Crk Sarcoma Virus Ct10 Oncogene Homolog, Isofor
Chain: A
Fragment: Residues 1-228
Synonym: V-Crk Sarcoma Virus Ct10 Oncogene Homolog, Avian, Phosphorylated Crk-II;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Crk
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl-21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22
methodSolution NMR
ligand PTR enzyme
Primary referenceStructural basis for the transforming activity of human cancer-related signaling adaptor protein CRK., Kobashigawa Y, Sakai M, Naito M, Yokochi M, Kumeta H, Makino Y, Ogura K, Tanaka S, Inagaki F, Nat Struct Mol Biol. 2007 Jun;14(6):503-10. Epub 2007 May 21. PMID:17515907
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (2dvj.pdb1.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 2DVJ
  • CSU: Contacts of Structural Units for 2DVJ
  • Retrieve 2DVJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DVJ from S2C, [Save to disk]
    • View 2DVJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DVJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DVJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dvj_A] [2dvj]
  • SWISS-PROT database: [P46108]
  • Domain organization of [CRK_HUMAN] by SWISSPFAM
  • Domains found in 2DVJ: [SH2] [SH3 ] by SMART
    • Other resources with information on 2DVJ
  • Community annotation for 2DVJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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