2DWQ Hydrolase date Aug 16, 2006
title Thermus Thermophilus Ychf Gtp-Binding Protein
authors M.Kukimoto-Niino, K.Murayama, M.Shorouzu, S.Kuramitsu, S.Yokoyam Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Gtp-Binding Protein
Chain: A, B
Engineered: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11b
symmetry Space Group: P 1
R_factor 0.208 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.940 54.357 92.585 80.11 76.46 73.12
method X-Ray Diffractionresolution 2.95 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (2dwq.pdb1.gz) 56 Kb
  • Biological Unit Coordinates (2dwq.pdb2.gz) 54 Kb
  • CSU: Contacts of Structural Units for 2DWQ
  • Likely Quarternary Molecular Structure file(s) for 2DWQ
  • Structure Factors (156 Kb)
  • Retrieve 2DWQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DWQ from S2C, [Save to disk]
  • Re-refined 2dwq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2DWQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DWQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DWQ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dwq_A] [2dwq] [2dwq_B]
  • SWISS-PROT database: [Q5SJ29]
  • Domain organization of [Q5SJ29_THET8] by SWISSPFAM
    • Other resources with information on 2DWQ
  • Community annotation for 2DWQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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