2DX6 Structural Genomics, Unknown Function date Aug 24, 2006
title Crystal Structure Of Conserved Hypothetical Protein, Ttha013 Thermus Thermophilus Hb8
authors S.Kishishita, K.Murayama, T.Terada, M.Shirouzu, S.Kuramitsu, S.Yo Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Hypothetical Protein Ttha0132
Chain: A, B
Engineered: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834de3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pc010132-42
symmetry Space Group: C 1 2 1
R_factor 0.195 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
149.967 30.522 62.263 90.00 110.46 90.00
method X-Ray Diffractionresolution 1.78 Å
ligand ACT, IPA, MSE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (2dx6.pdb1.gz) 28 Kb
  • Biological Unit Coordinates (2dx6.pdb2.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 2DX6
  • CSU: Contacts of Structural Units for 2DX6
  • Likely Quarternary Molecular Structure file(s) for 2DX6
  • Structure Factors (218 Kb)
  • Retrieve 2DX6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DX6 from S2C, [Save to disk]
  • Re-refined 2dx6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2DX6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DX6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DX6, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dx6_A] [2dx6] [2dx6_B]
  • SWISS-PROT database: [Q5SM11]
  • Domain organization of [Q5SM11_THET8] by SWISSPFAM
  • Domain found in 2DX6: [A1pp ] by SMART
    • Other resources with information on 2DX6
  • Community annotation for 2DX6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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