2DY4 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CTG, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, C, A, D
  • DNA-directed DNA polymerase ...
  • nuclease activity
  • exonuclease activity
  • 3'-5' exonuclease activity


    • Primary referenceA structural rationale for stalling of a replicative DNA polymerase at the most common oxidative thymine lesion, thymine glycol., Aller P, Rould MA, Hogg M, Wallace SS, Doublie S, Proc Natl Acad Sci U S A. 2007 Jan 16;104(3):814-8. Epub 2007 Jan 8. PMID:17210917
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (646 Kb) [Save to disk]
  • Biological Unit Coordinates (2dy4.pdb1.gz) 166 Kb
  • Biological Unit Coordinates (2dy4.pdb2.gz) 167 Kb
  • Biological Unit Coordinates (2dy4.pdb3.gz) 167 Kb
  • Biological Unit Coordinates (2dy4.pdb4.gz) 159 Kb
  • LPC: Ligand-Protein Contacts for 2DY4
  • CSU: Contacts of Structural Units for 2DY4
  • Likely Quarternary Molecular Structure file(s) for 2DY4
  • Structure Factors (3378 Kb)
  • Retrieve 2DY4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DY4 from S2C, [Save to disk]
  • Re-refined 2dy4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2DY4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dy4] [2dy4_A] [2dy4_B] [2dy4_C] [2dy4_D] [2dy4_E] [2dy4_F] [2dy4_G] [2dy4_H] [2dy4_I] [2dy4_J] [2dy4_K] [2dy4_L]
  • SWISS-PROT database: [Q38087]
  • Domain found in 2DY4: [POLBc ] by SMART

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