2E3J Hydrolase date Nov 27, 2006
title The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From Mycobacterium Tuberculosis At 2.1 Angstrom
authors B.K.Biswal, Mycobacterium Tuberculosis Structural Proteomics (Xmtb)
compound source
Molecule: Epoxide Hydrolase Ephb
Chain: A
Synonym: Epoxide Hydrolase B, Epoxide Hydratase, Epoxide Hy
Ec: 3.3.2.3
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 83332
Strain: H37rv
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 De3 (Ai)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest17
symmetry Space Group: P 41 21 2
R_factor 0.235 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.258 66.258 157.109 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand ACT enzyme Hydrolase E.C.3.3.2.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe molecular structure of epoxide hydrolase B from Mycobacterium tuberculosis and its complex with a urea-based inhibitor., Biswal BK, Morisseau C, Garen G, Cherney MM, Garen C, Niu C, Hammock BD, James MN, J Mol Biol. 2008 Sep 12;381(4):897-912. Epub 2008 Jun 17. PMID:18585390
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (2e3j.pdb1.gz) 116 Kb
  • Biological Unit Coordinates (2e3j.pdb2.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 2E3J
  • CSU: Contacts of Structural Units for 2E3J
  • Likely Quarternary Molecular Structure file(s) for 2E3J
  • Structure Factors (176 Kb)
  • Retrieve 2E3J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2E3J from S2C, [Save to disk]
  • Re-refined 2e3j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2E3J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2E3J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2E3J, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2e3j] [2e3j_A]
  • SWISS-PROT database: [A4KI82]
  • Domain organization of [A4KI82_MYCTU] by SWISSPFAM
  • Other resources with information on 2E3J
  • Community annotation for 2E3J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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