2EID Oxidoreductase date Mar 12, 2007
title Galactose Oxidase W290g Mutant
authors S.E.Phillips, M.J.Mcpherson, P.F.Knowles, N.Akyumani, S.J.Firban S.Tamber
compound source
Molecule: Galactose Oxidase
Chain: A
Fragment: Residues 1-639
Synonym: Gao
Ec: 1.1.3.9
Engineered: Yes
Mutation: Yes
Organism_scientific: Gibberella Zeae
Organism_taxid: 5518
Expression_system: Emericella Nidulans
Expression_system_taxid: 162425
Expression_system_strain: G191
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgof1
symmetry Space Group: P 65 2 2
R_factor 0.192 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.884 89.884 415.325 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand CU, NA enzyme Oxidoreductase E.C.1.1.3.9 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Stacking Tryptophan of Galactose Oxidase: A Second-Coordination Sphere Residue that Has Profound Effects on Tyrosyl Radical Behavior and Enzyme Catalysis(,)., Rogers MS, Tyler EM, Akyumani N, Kurtis CR, Spooner RK, Deacon SE, Tamber S, Firbank SJ, Mahmoud K, Knowles PF, Phillips SE, McPherson MJ, Dooley DM, Biochemistry. 2007 Apr 17;46(15):4606-18. Epub 2007 Mar 27. PMID:17385891
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]
  • Biological Unit Coordinates (2eid.pdb1.gz) 106 Kb
  • LPC: Ligand-Protein Contacts for 2EID
  • CSU: Contacts of Structural Units for 2EID
  • Likely Quarternary Molecular Structure file(s) for 2EID
  • Retrieve 2EID in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2EID from S2C, [Save to disk]
  • View 2EID in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2EID
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2EID, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2eid] [2eid_A]
  • SWISS-PROT database: [Q01745]
  • Domain organization of [GAOA_GIBZE] by SWISSPFAM
  • Domains found in 2EID: [FA58C] [Kelch ] by SMART
  • Other resources with information on 2EID
  • Community annotation for 2EID at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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