2EQ7	Oxidoreductase	date	Mar 30, 2007
title	Crystal Structure Of Lipoamide Dehydrogenase From Thermus Th Hb8 With Psbdo
authors	T.Nakai, N.Kamiya, Riken Structural Genomicsproteomics Initia (Rsgi)
compound		source
Molecule: 2-Oxoglutarate Dehydrogenase E3 Component Chain: A, B Synonym: Lipoamide Dehydrogenase, Dihydrolipoamide Dehydrog Ec: 1.8.1.4 Engineered: Yes		Organism_scientific: Thermus Thermophilus Organism_taxid: 300852 Strain: Hb8 Gene: Ttha0287 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Blr(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11a
Molecule: 2-Oxoglutarate Dehydrogenase E2 Component Chain: C Fragment: Peripheral Subunit Binding Domain Synonym: Dihydrolipoamide Succinyltransferase Ec: 2.3.1.61 Engineered: Yes		Synthetic: Yes Other_details: The 40-Residue Peptide Corresponding To A Do The Ttha0288 Protein Was Synthesized By Greiner
symmetry	Space Group: P 21 21 21	R_factor 0.207 R_Free 0.238
crystal cell	length a length b length c angle alpha angle beta angle gamma 85.028 107.073 131.706 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	FAD, NAD	enzyme	Oxidoreductase E.C.1.8.1.4 BRENDA
note	2EQ7 (Molecule of the Month:pdb154)is a representative structure
Gene Ontology	Chain Function Process Component A, B C

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (177 Kb) [Save to disk] Biological Unit Coordinates (2eq7.pdb1.gz) 170 Kb LPC: Ligand-Protein Contacts for 2EQ7 CSU: Contacts of Structural Units for 2EQ7 Likely Quarternary Molecular Structure file(s) for 2EQ7 Structure Factors (943 Kb) Retrieve 2EQ7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2EQ7 from S2C, [Save to disk] Re-refined 2eq7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2EQ7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2EQ7

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2EQ7, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2eq7_A] [2eq7_C] [2eq7] [2eq7_B] SWISS-PROT database: [Q5SLK5] [Q5SLK6] Domain organization of [Q5SLK5_THET8] [Q5SLK6_THET8] by SWISSPFAM

Other resources with information on 2EQ7

Community annotation for 2EQ7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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