2EXG Cell Adhesion date Nov 08, 2005
title Making Protein-Protein Interactions Drugable: Discovery Of L Molecular-Weight Ligands For The Af6 Pdz Domain
authors M.Joshi, C.Vargas, P.Boisguerin, G.Krause, M.Schade, H.Oschkinat
compound source
Molecule: Afadin
Chain: A
Fragment: Pdz Domain (Residues 985-1079)
Synonym: Af-6 Protein
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
ligand STF enzyme
Primary referenceDiscovery of low-molecular-weight ligands for the AF6 PDZ domain., Joshi M, Vargas C, Boisguerin P, Diehl A, Krause G, Schmieder P, Moelling K, Hagen V, Schade M, Oschkinat H, Angew Chem Int Ed Engl. 2006 Jun 2;45(23):3790-5. PMID:16671149
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (501 Kb) [Save to disk]
  • Biological Unit Coordinates (2exg.pdb1.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 2EXG
  • CSU: Contacts of Structural Units for 2EXG
  • Original NMR restraints for 2EXG from PDB
  • Retrieve 2EXG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2EXG from S2C, [Save to disk]
    • View 2EXG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2EXG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2EXG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2exg_A] [2exg]
  • SWISS-PROT database: [P55196]
  • Domain organization of [AFAD_HUMAN] by SWISSPFAM
  • Domain found in 2EXG: [PDZ ] by SMART
    • Other resources with information on 2EXG
  • Community annotation for 2EXG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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