2F4B	Transcription Activator	date	Nov 23, 2005
title	Crystal Structure Of The Ligand Binding Domain Of Human Ppar Complex With An Agonist
authors	I.L.Lu, Y.H.Peng, N.Mahindroo, H.P.Hsieh, S.Y.Wu
compound		source
Molecule: Peroxisome Proliferator-Activated Receptor Gamma Chain: A, B Fragment: Ligand Binding Domain Synonym: Ppar-Gamma Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex6p-1
symmetry	Space Group: P 1 21 1	R_factor 0.219 R_Free 0.288
crystal cell	length a length b length c angle alpha angle beta angle gamma 55.967 88.642 57.878 90.00 90.01 90.00
method	X-Ray Diffraction	resolution	2.07 Å
ligand	EHA BindingDB	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Indol-1-yl Acetic Acids as Peroxisome Proliferator-Activated Receptor Agonists: Design, Synthesis, Structural Biology, and Molecular Docking Studies., Mahindroo N, Wang CC, Liao CC, Huang CF, Lu IL, Lien TW, Peng YH, Huang WJ, Lin YT, Hsu MC, Lin CH, Tsai CH, Hsu JT, Chen X, Lyu PC, Chao YS, Wu SY, Hsieh HP, J Med Chem. 2006 Feb 9;49(3):1212-1216. PMID:16451087

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk] Biological Unit Coordinates (2f4b.pdb1.gz) 46 Kb Biological Unit Coordinates (2f4b.pdb2.gz) 46 Kb LPC: Ligand-Protein Contacts for 2F4B CSU: Contacts of Structural Units for 2F4B Likely Quarternary Molecular Structure file(s) for 2F4B Structure Factors (306 Kb) Retrieve 2F4B in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2F4B from S2C, [Save to disk] Re-refined 2f4b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2F4B in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2F4B

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2F4B, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2f4b_B] [2f4b] [2f4b_A] SWISS-PROT database: [P37231] Domain organization of [PPARG_HUMAN] by SWISSPFAM Domain found in 2F4B: [HOLI ] by SMART

Other resources with information on 2F4B

Community annotation for 2F4B at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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