2F5Q Catalytically inactive (E3Q) MutM crosslinked to oxoG:C containing DNA CC2 date
authors Banerjee, A., Santos, W.L., Verdine, G.L.
compound source
symmetry
R_factor
R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.35
ligand 8OG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of a DNA glycosylase searching for lesions., Banerjee A, Santos WL, Verdine GL, Science. 2006 Feb 24;311(5764):1153-7. PMID:16497933
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (2f5q.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 2F5Q
  • CSU: Contacts of Structural Units for 2F5Q
  • Likely Quarternary Molecular Structure file(s) for 2F5Q
  • Structure Factors (140 Kb)
  • Retrieve 2F5Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2F5Q from S2C, [Save to disk]
  • Re-refined 2f5q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2F5Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2F5Q
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2F5Q, from MSDmotif at EBI
  • Fold representative 2f5q from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f5q] [2f5q_C] [2f5q_B] [2f5q_A]
  • SWISS-PROT database: [P84131]
  • Domain organization of [P84131_BACST] by SWISSPFAM
  • Domains found in 2F5Q: [Fapy_DNA_glyco] [H2TH ] by SMART
  • Other resources with information on 2F5Q
  • Community annotation for 2F5Q at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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