2F8O Immune System date Dec 02, 2005
title A Native To Amyloidogenic Transition Regulated By A Backbone
authors C.M.Eakin, A.J.Berman, A.D.Miranker
compound source
Molecule: Beta-2-Microglobulin
Chain: A, B
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.184 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.948 89.948 54.760 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • cellular response to iron io...

    • Primary referenceA native to amyloidogenic transition regulated by a backbone trigger., Eakin CM, Berman AJ, Miranker AD, Nat Struct Mol Biol. 2006 Mar;13(3):202-208. Epub 2006 Feb 19. PMID:16491088
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (2f8o.pdb1.gz) 76 Kb
  • CSU: Contacts of Structural Units for 2F8O
  • Likely Quarternary Molecular Structure file(s) for 2F8O
  • Structure Factors (177 Kb)
  • Retrieve 2F8O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2F8O from S2C, [Save to disk]
  • Re-refined 2f8o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2F8O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2F8O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2F8O, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f8o_B] [2f8o_A] [2f8o]
  • SWISS-PROT database: [P61769]
  • Domain organization of [B2MG_HUMAN] by SWISSPFAM
  • Domain found in 2F8O: [IGc1 ] by SMART
    • Other resources with information on 2F8O
  • Community annotation for 2F8O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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