2FB8	Transferase	date	Dec 08, 2005
title	Structure Of The B-Raf Kinase Domain Bound To Sb-590885
authors	J.C.Lougheed, J.Lee, D.C.Chau, T.J.Stout
compound		source
Molecule: B-Raf Proto-Oncogene Serinethreonine-Protein Kin Chain: A, B Fragment: B-Raf Kinase Domain, Residues 445-723 Synonym: P94, V-Raf Murine Sarcoma Viral Oncogene Homolog B Ec: 2.7.1.37 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Braf, Braf1, Rafb1 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf-9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pacgp67
symmetry	Space Group: P 41 21 2	R_factor 0.199 R_Free 0.291
crystal cell	length a length b length c angle alpha angle beta angle gamma 95.638 95.638 159.222 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	215 BindingDB	enzyme	Transferase E.C.2.7.1.37 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Demonstration of a genetic therapeutic index for tumors expressing oncogenic BRAF by the kinase inhibitor SB-590885., King AJ, Patrick DR, Batorsky RS, Ho ML, Do HT, Zhang SY, Kumar R, Rusnak DW, Takle AK, Wilson DM, Hugger E, Wang L, Karreth F, Lougheed JC, Lee J, Chau D, Stout TJ, May EW, Rominger CM, Schaber MD, Luo L, Lakdawala AS, Adams JL, Contractor RG, Smalley KS, Herlyn M, Morrissey MM, Tuveson DA, Huang PS, Cancer Res. 2006 Dec 1;66(23):11100-5. PMID:17145850

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk] Biological Unit Coordinates (2fb8.pdb1.gz) 43 Kb Biological Unit Coordinates (2fb8.pdb2.gz) 43 Kb LPC: Ligand-Protein Contacts for 2FB8 CSU: Contacts of Structural Units for 2FB8 Likely Quarternary Molecular Structure file(s) for 2FB8 Structure Factors (137 Kb) Retrieve 2FB8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2FB8 from S2C, [Save to disk] Re-refined 2fb8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2FB8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2FB8

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2FB8, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2fb8_A] [2fb8] [2fb8_B] SWISS-PROT database: [P15056] Domain organization of [BRAF_HUMAN] by SWISSPFAM Domain found in 2FB8: [STYKc ] by SMART

Other resources with information on 2FB8

Community annotation for 2FB8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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