2FCF Structural Protein date Dec 12, 2005
title The Crystal Structure Of The 7th Pdz Domain Of Mpdz (Mupp-1)
authors E.Papagrigoriou, G.Berridge, C.Johansson, S.Colebrook, E.Salah, N C.Smee, P.Savitsky, J.Bray, G.Schoch, C.Phillips, C.Gileadi, M.Soundarajan, X.Yang, J.M.Elkins, F.Gorrec, A.Turnbull, A.Edwar C.Arrowsmith, J.Weigelt, M.Sundstrom, D.A.Doyle, Structural Gen Consortium (Sgc)
compound source
Molecule: Multiple Pdz Domain Protein
Chain: A
Fragment: Pdz 7 Domain
Synonym: Multi Pdz Domain Protein 1, Multi-Pdz-Domain Prote Mpdz, Mupp1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mpdz, Mupp1
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.122 43.801 50.167 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.76 Å
Primary referenceStructure of PICK1 and other PDZ domains obtained with the help of self-binding C-terminal extensions., Elkins JM, Papagrigoriou E, Berridge G, Yang X, Phillips C, Gileadi C, Savitsky P, Doyle DA, Protein Sci. 2007 Apr;16(4):683-94. PMID:17384233
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (19 Kb) [Save to disk]
  • Biological Unit Coordinates (2fcf.pdb1.gz) 15 Kb
  • CSU: Contacts of Structural Units for 2FCF
  • Likely Quarternary Molecular Structure file(s) for 2FCF
  • Structure Factors (64 Kb)
  • Retrieve 2FCF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FCF from S2C, [Save to disk]
  • Re-refined 2fcf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2FCF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2FCF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FCF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fcf_A] [2fcf]
  • SWISS-PROT database: [O75970]
  • Domain organization of [MPDZ_HUMAN] by SWISSPFAM
  • Domain found in 2FCF: [PDZ ] by SMART
    • Other resources with information on 2FCF
  • Community annotation for 2FCF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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