2FCM Structural Protein date Dec 12, 2005
title X-Ray Crystal Structure Of A Chemically Synthesized [D-Gln35 With A Cubic Space Group
authors D.Bang, A.V.Gribenko, V.Tereshko, A.A.Kossiakoff, S.B.Kent, G.I.M
compound source
Molecule: Ubiquitin
Chain: A, B
Fragment: Residues 1-76
Engineered: Yes
Mutation: Yes
 Synthetic: Yes
Other_details: The Protein Was Chemically Synthesized. The Of The Protein Can Be Naturally Found In Homo Sapiens (Huma
symmetry Space Group: P 43 3 2
R_factor 0.249 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
105.532 105.532 105.532 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand ACT, CD, DGN enzyme
Primary referenceDissecting the energetics of protein alpha-helix C-cap termination through chemical protein synthesis., Bang D, Gribenko AV, Tereshko V, Kossiakoff AA, Kent SB, Makhatadze GI, Nat Chem Biol. 2006 Mar;2(3):139-43. Epub 2006 Jan 30. PMID:16446709
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (2fcm.pdb1.gz) 14 Kb
  • Biological Unit Coordinates (2fcm.pdb2.gz) 14 Kb
  • LPC: Ligand-Protein Contacts for 2FCM
  • CSU: Contacts of Structural Units for 2FCM
  • Likely Quarternary Molecular Structure file(s) for 2FCM
  • Structure Factors (158 Kb)
  • Retrieve 2FCM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FCM from S2C, [Save to disk]
  • Re-refined 2fcm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2FCM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2FCM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FCM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fcm_B] [2fcm] [2fcm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2FCM: [UBQ ] by SMART
    • Other resources with information on 2FCM
  • Community annotation for 2FCM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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