2FDB	Hormone Growth Factor Transferase	date	Dec 13, 2005
title	Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In Com Fgf Receptor (Fgfr) 2c
authors	M.Mohammadi, S.K.Olsen
compound		source
Molecule: Fibroblast Growth Factor 8 Isoform B Chain: M, N Synonym: Fgf8b Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Fibroblast Growth Factor Receptor 2 Chain: P, R Synonym: Fgfr2c; Fgfr-2; Keratinocyte Growth Factor Recepto Antigen; Ec: 2.7.1.112 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Fgfr2, Bek, Ksam Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 1 2 1	R_factor 0.239 R_Free 0.272
crystal cell	length a length b length c angle alpha angle beta angle gamma 170.846 46.908 109.616 90.00 91.66 90.00
method	X-Ray Diffraction	resolution	2.28 Å
ligand		enzyme	Transferase E.C.2.7.1.112 BRENDA
Gene Ontology	Chain Function Process Component M, N
Primary reference	Structural basis by which alternative splicing modulates the organizer activity of FGF8 in the brain., Olsen SK, Li JY, Bromleigh C, Eliseenkova AV, Ibrahimi OA, Lao Z, Zhang F, Linhardt RJ, Joyner AL, Mohammadi M, Genes Dev. 2006 Jan 15;20(2):185-98. Epub 2005 Dec 29. PMID:16384934

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk] Biological Unit Coordinates (2fdb.pdb1.gz) 56 Kb Biological Unit Coordinates (2fdb.pdb2.gz) 53 Kb CSU: Contacts of Structural Units for 2FDB Likely Quarternary Molecular Structure file(s) for 2FDB Structure Factors (628 Kb) Retrieve 2FDB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2FDB from S2C, [Save to disk] Re-refined 2fdb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2FDB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2FDB

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2FDB, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2fdb_N] [2fdb_R] [2fdb] [2fdb_P] [2fdb_M] SWISS-PROT database: [P55075] [P21802] Domain organization of [FGF8_HUMAN] [FGFR2_HUMAN] by SWISSPFAM Domains found in 2FDB: [FGF] [IGc2 ] by SMART

Other resources with information on 2FDB

Community annotation for 2FDB at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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