2FLR	Hydrolase Blood Clotting	date	Jan 06, 2006
title	Novel 5-Azaindole Factor Viia Inhibitors
authors	J.R.Riggs, H.Hu, A.Kolesnikov, Z.Tong, E.M.Leahy, K.E.Wesson, W.D. D.Vijaykumar, T.A.Wahl, P.A.Sprengeler, M.J.Green, C.Yu, B.A.Kat W.B.Young
compound		source
Molecule: Coagulation Factor Vii Chain: L Fragment: Light Chain, Residues 61-212 Ec: 3.4.21.21 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F7 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Coagulation Factor Vii Chain: H Fragment: Heavy Chain, Residues 213-466 Ec: 3.4.21.21 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F7 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Tissue Factor Chain: T Fragment: Residues 34-251 Synonym: Tf, Coagulation Factor III, Thromboplastin, Cd142 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F3 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21-Des3 Expression_system_vector_type: Plasmid Pet-21a(+)
symmetry	Space Group: P 1 21 1	R_factor 0.223 R_Free 0.259
crystal cell	length a length b length c angle alpha angle beta angle gamma 77.310 68.640 77.890 90.00 91.15 90.00
method	X-Ray Diffraction	resolution	2.35 Å
ligand	7NH BindingDB	enzyme	Hydrolase E.C.3.4.21.21 BRENDA
Gene Ontology	Chain Function Process Component H L T
Primary reference	Novel 5-azaindole factor VIIa inhibitors., Riggs JR, Hu H, Kolesnikov A, Leahy EM, Wesson KE, Shrader WD, Vijaykumar D, Wahl TA, Tong Z, Sprengeler PA, Green MJ, Yu C, Katz BA, Sanford E, Nguyen M, Cabuslay R, Young WB, Bioorg Med Chem Lett. 2006 Jun 15;16(12):3197-200. Epub 2006 Apr 18. PMID:16621549

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk] Biological Unit Coordinates (2flr.pdb1.gz) 90 Kb LPC: Ligand-Protein Contacts for 2FLR CSU: Contacts of Structural Units for 2FLR Likely Quarternary Molecular Structure file(s) for 2FLR Structure Factors (234 Kb) Retrieve 2FLR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2FLR from S2C, [Save to disk] Re-refined 2flr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2FLR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2FLR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2FLR, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2flr_T] [2flr_L] [2flr_H] [2flr] SWISS-PROT database: [P08709] [P13726] Domain organization of [FA7_HUMAN] [TF_HUMAN] by SWISSPFAM Domains found in 2FLR: [EGF_CA] [EGF_like] [GLA] [Tryp_SPc ] by SMART

Other resources with information on 2FLR

Community annotation for 2FLR at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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