2FRS Transport Protein date Jan 20, 2006
title Crystal Structure Of The F15w Mutant Of Apo-Cellular Retinoi Binding Protein Type II At 1.51 Angstroms Resolution
authors S.Vaezeslami, J.H.Geiger
compound source
Molecule: Cellular Retinoic Acid-Binding Protein 2
Chain: A, B
Synonym: Cellular Retinoic Acid- Binding Protein II, Crabp- Retinoic Acid-Binding Protein II, Cellular;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Crabp2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet17-B
symmetry Space Group: P 1
R_factor 0.174 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
34.582 37.030 58.693 102.00 106.12 93.00
method X-Ray Diffractionresolution 1.51 Å
ligand NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe structure of Apo-wild-type cellular retinoic acid binding protein II at 1.4 A and its relationship to ligand binding and nuclear translocation., Vaezeslami S, Mathes E, Vasileiou C, Borhan B, Geiger JH, J Mol Biol. 2006 Oct 27;363(3):687-701. Epub 2006 Aug 26. PMID:16979656
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (2frs.pdb1.gz) 51 Kb
  • Biological Unit Coordinates (2frs.pdb2.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 2FRS
  • CSU: Contacts of Structural Units for 2FRS
  • Likely Quarternary Molecular Structure file(s) for 2FRS
  • Structure Factors (279 Kb)
  • Retrieve 2FRS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FRS from S2C, [Save to disk]
  • Re-refined 2frs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2FRS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FRS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FRS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2frs_B] [2frs_A] [2frs]
  • SWISS-PROT database: [P29373]
  • Domain organization of [RABP2_HUMAN] by SWISSPFAM
  • Other resources with information on 2FRS
  • Community annotation for 2FRS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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